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maxquant 1 6 17 0 against a hydrophila atcc 7966 uniport database  (ATCC)


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    Structured Review

    ATCC maxquant 1 6 17 0 against a hydrophila atcc 7966 uniport database
    The glyoxylic acid and dicarboxylic acid pathway affects the biofilm formation of A <t>hydrophila</t> . (A) Protein-protein interaction prediction of altered proteins in glyoxylate and dicarboxylate metabolism pathway. Red color indicates up-regulation of protein; blue color indicates down-regulation of protein; (B) The mRNA levels of six glyoxylate and dicarboxylate metabolism pathway related genes were analyzed by qPCR method between ΔuidR and WT strain in biofilm; (C) The biofilm formation ability of several glyoxylic acid and dicarboxylic acid metabolism related mutants. Error bars represent the standard error of the mean (SEM). Asterisks indicate differences in T-test between WT and mutant strains. *** P <0.001; **** P <0.0001.
    Maxquant 1 6 17 0 Against A Hydrophila Atcc 7966 Uniport Database, supplied by ATCC, used in various techniques. Bioz Stars score: 98/100, based on 1535 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/a+hydrophila+atcc+7966+database/Aeromonas+hydrophila/pmc10995333-104-7-12
    Average 98 stars, based on 1535 article reviews
    maxquant 1 6 17 0 against a hydrophila atcc 7966 uniport database - by Bioz Stars, 2026-11
    98/100 stars

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    1) Product Images from "Quantitative proteomics analysis reveals an important role of the transcriptional regulator UidR in the bacterial biofilm formation of Aeromonas hydrophila"

    Article Title: Quantitative proteomics analysis reveals an important role of the transcriptional regulator UidR in the bacterial biofilm formation of Aeromonas hydrophila

    Journal: Frontiers in Cellular and Infection Microbiology

    doi: 10.3389/fcimb.2024.1380747

    The glyoxylic acid and dicarboxylic acid pathway affects the biofilm formation of A hydrophila . (A) Protein-protein interaction prediction of altered proteins in glyoxylate and dicarboxylate metabolism pathway. Red color indicates up-regulation of protein; blue color indicates down-regulation of protein; (B) The mRNA levels of six glyoxylate and dicarboxylate metabolism pathway related genes were analyzed by qPCR method between ΔuidR and WT strain in biofilm; (C) The biofilm formation ability of several glyoxylic acid and dicarboxylic acid metabolism related mutants. Error bars represent the standard error of the mean (SEM). Asterisks indicate differences in T-test between WT and mutant strains. *** P <0.001; **** P <0.0001.
    Figure Legend Snippet: The glyoxylic acid and dicarboxylic acid pathway affects the biofilm formation of A hydrophila . (A) Protein-protein interaction prediction of altered proteins in glyoxylate and dicarboxylate metabolism pathway. Red color indicates up-regulation of protein; blue color indicates down-regulation of protein; (B) The mRNA levels of six glyoxylate and dicarboxylate metabolism pathway related genes were analyzed by qPCR method between ΔuidR and WT strain in biofilm; (C) The biofilm formation ability of several glyoxylic acid and dicarboxylic acid metabolism related mutants. Error bars represent the standard error of the mean (SEM). Asterisks indicate differences in T-test between WT and mutant strains. *** P <0.001; **** P <0.0001.

    Techniques Used: Mutagenesis

    Related Articles

    Software:

    Article Title: Profile of protein lysine propionylation in Aeromonas hydrophila and its role in enzymatic regulation.
    Article Snippet: Protein lysine propionylation (Kpr) modification is a novel post-translational modification (PTM) of prokaryotic cells that was recently discovered; however, it is not clear how this modification regulates bacterial life.. In this study, the protein Kpr modification profile in Aeromonas hydrophilawas identified by high specificity antibody-based affinity enrichment combined with high resolution LC MS/MS.. A total of 98 lysine-propionylated peptides with 59 Kpr proteins were identified, most of which were associated with energy metabolism, transcription and translation processes.

    Article Title: Aeromonas hydrophila CobQ is a new type of NAD + - and Zn 2+ -independent protein lysine deacetylase
    Article Snippet: For the quantitative acetylome, the enriched peptides were analyzed using an Orbitrap Exploris 480 mass spectrometer equipped with a high-field asymmetric waveform ion mobility (FAIMS) Pro spectrometer and an EASY-nLC 1200 system (Thermo Fisher Scientific). .. The data obtained were compared and annotated with the BSA (UniProt ID P02769) or A. hydrophila ATCC 7966 database from the UniProt database using MaxQuant v1.6.2.10 software. ..

    Article Title: Aeromonas hydrophila CobQ is a new type of NAD+- and Zn2+- independent protein lysine deacetylase
    Article Snippet: For the quantitative acetylome, the enriched peptides were analyzed using an Orbitrap Exploris 480 mass spectrometer equipped with a high- field asymmetric waveform ion mobility (FAIMS) Pro spectrometer and an EASY- nLC 1200 system (Thermo Fisher Scientific). .. The data obtained were compared and annotated with the BSA (UniProt ID P02769) or A. hydrophila ATCC 7966 database from the UniProt database using MaxQuant v1.6.2.10 software. ..

    Article Title: Aeromonas hydrophila CobQ is a new type of NAD + - and Zn 2+ -independent protein lysine deacetylase in prokaryotes
    Article Snippet: For the quantitative acetylome, the enriched peptides were analyzed using an Orbitrap Exploris 480 mass spectrometer equipped with a high-field asymmetric waveform ion mobility (FAIMS) Pro spectrometer and an EASY-nLC 1200 system (Thermo Fisher Scientific). .. The data obtained were compared and annotated with the BSA (UniProt ID P02769) or A. hydrophila ATCC 7966 database from the UniProt database using MaxQuant v1.6.2.10 software. ..

    Data-dependent acquisition:

    Article Title: Proteomics analysis reveals the effect of Aeromonas hydrophila sirtuin CobB on biological functions.
    Article Snippet: Our previous studies have profiled lysine acetylation and succinylation modifications in Aeromonas hydrophila protein and have found that CobB may be involved in lysine deacylation; however, its effects on bacterial biological function are still unknown.. In this study, a dataindependent acquisition (DIA)-based proteomics method was used to compare the protein abundance between cob-deleted mutants and wild-type strains.. Of the total 2385 identified proteins, 385 were found to have increased abundance, while only 46 showed decreased abundance.

    Article Title: Quantitative proteomics insights into the response mechanisms of Aeromonas hydrophila to chromium stress.
    Article Snippet: Aeromonas hydrophila, an opportunistic pathogen of aquatic fish, can survive under various environmental stresses, including exposure to chromium (Cr), a heavy metal that exerts dose-dependent toxic effects on bacteria.. Elucidating the mechanism underlying its response to chromium stress holds considerable significance, while related studies are still scarce.. In this study, growth curve experiments showed that potassium dichromate inhibited bacterial growth in a concentration-dependent manner.

    Data-independent acquisition:

    Article Title: Unveiling the antibacterial mechanism of resveratrol against Aeromonas hydrophila through proteomics analysis
    Article Snippet: .. Subsequently, the DIA raw data obtained were imported into Spectronout Pulsar X and matched against the A. hydrophila ATCC 7966 database for qualitative and quantitative analysis of proteins. ..

    other:

    Article Title: Integrated Succinylome and Metabolome Profiling Reveals Crucial Role of S-Ribosylhomocysteine Lyase in Quorum Sensing and Metabolism of Aeromonas hydrophila
    Article Snippet: Protein identification was performed using the ThermoFisher Scientific TM Q Exactive TM Plus mass spectrometer (ThermoFisher Scientific, San Jose, CA).

    Construct:

    Article Title: Quantitative proteomics insights into the response mechanisms of Aeromonas hydrophila to chromium stress.
    Article Snippet: Aeromonas hydrophila, an opportunistic pathogen of aquatic fish, can survive under various environmental stresses, including exposure to chromium (Cr), a heavy metal that exerts dose-dependent toxic effects on bacteria.. Elucidating the mechanism underlying its response to chromium stress holds considerable significance, while related studies are still scarce.. In this study, growth curve experiments showed that potassium dichromate inhibited bacterial growth in a concentration-dependent manner.



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    Image Search Results


    The glyoxylic acid and dicarboxylic acid pathway affects the biofilm formation of A hydrophila . (A) Protein-protein interaction prediction of altered proteins in glyoxylate and dicarboxylate metabolism pathway. Red color indicates up-regulation of protein; blue color indicates down-regulation of protein; (B) The mRNA levels of six glyoxylate and dicarboxylate metabolism pathway related genes were analyzed by qPCR method between ΔuidR and WT strain in biofilm; (C) The biofilm formation ability of several glyoxylic acid and dicarboxylic acid metabolism related mutants. Error bars represent the standard error of the mean (SEM). Asterisks indicate differences in T-test between WT and mutant strains. *** P <0.001; **** P <0.0001.

    Journal: Frontiers in Cellular and Infection Microbiology

    Article Title: Quantitative proteomics analysis reveals an important role of the transcriptional regulator UidR in the bacterial biofilm formation of Aeromonas hydrophila

    doi: 10.3389/fcimb.2024.1380747

    Figure Lengend Snippet: The glyoxylic acid and dicarboxylic acid pathway affects the biofilm formation of A hydrophila . (A) Protein-protein interaction prediction of altered proteins in glyoxylate and dicarboxylate metabolism pathway. Red color indicates up-regulation of protein; blue color indicates down-regulation of protein; (B) The mRNA levels of six glyoxylate and dicarboxylate metabolism pathway related genes were analyzed by qPCR method between ΔuidR and WT strain in biofilm; (C) The biofilm formation ability of several glyoxylic acid and dicarboxylic acid metabolism related mutants. Error bars represent the standard error of the mean (SEM). Asterisks indicate differences in T-test between WT and mutant strains. *** P <0.001; **** P <0.0001.

    Article Snippet: The raw MS data were searched using Maxquant 1.6.17.0 against A. hydrophila ATCC 7966 Uniport database.

    Techniques: Mutagenesis